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Conversational AI
Seven RAG Engineering Failure Points

Seven RAG Engineering Failure Points

Published Date:
April 2, 2025
Last Updated ON:
November 20, 2025

Retrieval-Augmented Generation (RAG) systems remains a compelling solution to the challenge of relevant up-to-date reference data at inference time. Integrating retrieval mechanisms with the generative capabilities of LLMs & RAG systems can synthesise accurate, up-to-date and contextually relevant information.

Visual listing seven RAG engineering failure points: missing content, not in content, incorrect specificity, not complete, missed top ranked, wrong format, and not extracted.

 RAG Advantages

A Retrieval-Augmented Generation (RAG) system combines information retrieval capabilities with the generative prowess of LLMs. Considering the image below, there are three distinct advantages to RAG which makes it such a compelling option. The first is that RAG reduces LLM hallucination. Hallucination is when an LLM generates highly succinct, coherent, plausible and believable answers. However, these responses are factually incorrect; this approximation of LLMs to the truth can be remedied by leveraging the immense in-context learning abilities of LLMs. This is achieved by injecting prompts at inference with highly contextual reference data. The second advantage of RAG is that source and reference data are linked to interactions and conversations. Hence RAG is an easy way to introduce organisation, enterprise or industry specific data, together with definitions, terms and more.

Thirdly, the process of chunking and indexing the reference data is very much an automated process hence no human annotation of data is required.

Graphic highlighting key advantages of RAG, including reduced hallucination, linked source and reference data, and no need for human annotation.
Diagram showing RAG benefits: less hallucination, more context

Rag challenges

The study states that validation of a RAG system is only feasible during operation and the robustness of a RAG system evolves rather than designed at the start. This assumption is the traditional belief in terms of user intents; and that user intents needs to be discovered as the application is in use. I disagree strongly with this assumption, as the long tail of intent distribution can be successfully detected and addressed by leveraging the first two steps of NLU Design.

Rag architecture

The study contains a detailed RAG architecture. with the Index Process shown, and the Query Process. The Index Process takes place at design-time, also referred to as development time. The query time is also known as inference time, or run-time, as shown on the second row. What I particularly like is the fact that mandatory elements of the RAG architecture is underlined, while optional elements are not. With this in mind, the process of chunking and creating a vector database entry (indexing/embedding) are mandatory. Together with the retriever and Reader.

Additional features adding a Reranker or a Consolidator or Rewriter add complexity, together with scalability and flexibility.

Diagram of the RAG indexing and query pipeline showing chunking, retrieval, reranking, consolidation, and reading steps, with labeled failure points such as missing content, incorrect specificity, and incomplete extraction.
RAG architecture illustrating indexing and query processes

The Consolidator is responsible for processing the chunks, which is important to overcome limitations of large language models in terms of token and rate limits.

Readers are responsible for filtering the noise from the prompt, complying to formatting templates and producing the output to return for the query.

Seven potential rag failure points

1. Missing content

Failure can occur while posing a question that cannot be addressed using the existing documents. In the favourable scenario, the RAG system will simply reply with a message such as “Sorry, I don’t know.” However, in cases where questions are relevant to the content but lack specific answers, the system might be misled into providing a response.

2. Missed top ranked

The document contains the answer to the question but didn’t rank high enough to be presented to the user. In theory, all documents are ranked and considered for further processing. However, in practice, only the top K documents are returned, where the value of K is chosen based on performance metrics.

3. Not in context

Documents containing the answer were successfully retrieved from the database but were not included in the context used to generate a response.

This situation arises when multiple documents are retrieved from the database, and a consolidation process is employed to extract the answer.

4. Wrong format

The question required extracting information in a specific format, such as a table or list, yet the large language model disregarded this instruction.

5. Incorrect specificity

The response includes an answer, but it lacks the required specificity or is overly specific, failing to meet the user’s needs.

This situation arises when the designers of the Retrieval-Augmented Generation (RAG) system have a predetermined outcome for a given question, such as providing educational content for students.

In such cases, the response should include not only the answer but also specific educational materials. Incorrect specificity can also occur when users are uncertain about how to phrase a question and provide overly general queries.

6. Not extracted

In this scenario, the answer is within the context provided, but the large language model fails to accurately extract it. This usually happens when there is excessive noise or conflicting information within the context.

7. Incomplete

Incomplete answers are not necessarily incorrect but lack some information, even though it was present in the context and could have been extracted.

For instance, consider a question like “What are the key points covered in documents A, B, and C?” A more effective approach would be to ask these questions separately for each document to ensure comprehensive coverage.

I need to mention that this scenario is solved for by a approach from LlamaIndex called Agentic RAG. Agentic RAG allows for a lower level agent tool per document, with a higher order agent orchestrating the agent tools.

Chunking

Chunking is a natural language processing technique used to group words or tokens together based on specific criteria, such as syntactic structure or meaning.

It involves dividing a sentence into segments, or “chunks,” that consist of one or more words and typically include a noun and its modifiers.

Chunking helps in identifying meaningful units of text, which can then be processed or analysed further. This technique is commonly used in tasks like information extraction, named entity recognition, and shallow parsing.

Chunking documents may seem straightforward, but its quality significantly impacts the retrieval process, particularly concerning the embeddings of the chunks and their matching to user queries.

Two main approaches to chunking exist:

  1. heuristic-based, which relies on punctuation or paragraph breaks, and
  2. semantic chunking, which uses text semantics to determine chunk boundaries.

Further research should delve into the trade-offs between these methods and their impact on crucial downstream processes like embedding and similarity matching. Establishing a systematic evaluation framework to compare chunking techniques based on metrics such as query relevance and retrieval accuracy would greatly advance the field.

Embeddings

Embeddings represent a dynamic research area, encompassing the generation of embeddings for multimedia and multimodal chunks, such as tables, figures, and formulas.

Chunk embeddings are usually generated during system development or when indexing a new document. The pre-processing of queries plays a vital role in the performance of a Retrieval-Augmented Generation (RAG) system, especially in managing negative or ambiguous queries.

Further exploration is necessary on architectural patterns and approaches to tackle inherent limitations in embeddings, as the quality of a match is often domain-specific.

In closing

For highly scalable implementations the most appropriate approach seems to be something called Agentic RAG.

The topic of Agentic RAG explores how agents can be incorporated into existing RAG pipelines for enhanced, conversational search and retrieval.

Find the full study here.
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Cobus Greyling
Cobus Greyling
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